5VHZ	Transport Protein	date	Apr 13, 2017
title	Glua2-2xgsg1l Bound To L-Quisqualate
authors	E.C.Twomey, M.V.Yelshanskaya, R.A.Grassucci, J.Frank, A.I.Sobole
compound		source
Molecule: Glutamate Receptor 2,Germ Cell-Specific Gene 1-Li Protein; Chain: A, B, C, D, E, F Synonym: Glur-2,Ampa-Selective Glutamate Receptor 2,Glur-B, Glutamate Receptor Ionotropic,Ampa 2,Glua2,Gsg1-Like Protei Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Rat Organism_taxid: 10116 Gene: Gria2, Glur2, Gsg1l Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek-293s Expression_system_atcc_number: Crl-3022
symmetry	Space Group: P 1	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 1.000 1.000 1.000 90.00 90.00 90.00
method	Electron Microscopy	resolution	8.40 Å
ligand	QUS	enzyme
Gene Ontology	Chain Function Process Component F, A, D, C, E, B ion channel activity extracellularly glutamate-ga... ligand-gated ion channel act... transmitter-gated ion channe...
Primary reference	Structural Bases of Desensitization in AMPA Receptor-Auxiliary Subunit Complexes., Twomey EC, Yelshanskaya MV, Grassucci RA, Frank J, Sobolevsky AI, Neuron. 2017 May 3;94(3):569-580.e5. doi: 10.1016/j.neuron.2017.04.025. PMID:28472657

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (562 Kb) [Save to disk] Biological Unit Coordinates (5vhz.pdb1.gz) 543 Kb LPC: Ligand-Protein Contacts for 5VHZ CSU: Contacts of Structural Units for 5VHZ Retrieve 5VHZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5VHZ from S2C, [Save to disk]

View 5VHZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5VHZ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vhz_F] [5vhz_D] [5vhz_B] [5vhz] [5vhz_A] [5vhz_E] [5vhz_C] SWISS-PROT database: Domain organization of by SWISSPFAM

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