5VKV Oxidoreductase date Apr 24, 2017
title Solution Nmr Structure Of The Membrane Electron Transporter
authors Y.Zhou, J.H.Bushweller
compound source
Molecule: Cytochrome C-Type Biogenesis Protein Ccda
Chain: A
Engineered: Yes
Mutation: Yes
 Organism_scientific: Thermus Thermophilus (Strain Hb8 Atc Dsm 579);
Organism_taxid: 300852
Strain: Hb8 Atcc 27634 Dsm 579
Gene: Ttha1409
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_plasmid: Pet22b
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure and elevator mechanism of the membrane electron transporter CcdA., Zhou Y, Bushweller JH, Nat Struct Mol Biol. 2018 Feb;25(2):163-169. doi: 10.1038/s41594-018-0022-z. Epub, 2018 Jan 29. PMID:29379172
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (576 Kb) [Save to disk]
  • Biological Unit Coordinates (5vkv.pdb1.gz) 58 Kb
  • CSU: Contacts of Structural Units for 5VKV
  • Original NMR restraints for 5VKV from PDB
  • Retrieve 5VKV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VKV from S2C, [Save to disk]
    • View 5VKV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5VKV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vkv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5VKV
  • Community annotation for 5VKV at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science