5VND	Transferase Transferase Inhibitor	date	Apr 30, 2017
title	Crystal Structure Of Fgfr1-Y563c (Fgfr4 Surrogate) Covalentl H3b-6527
authors	J.H.C.Tsai, D.Reynolds, P.Fekkes, P.Smith, N.A.Larsen
compound		source
Molecule: Fibroblast Growth Factor Receptor 1 Chain: A, B Fragment: Unp Residues 458-765 Synonym: Fgfr-1,Basic Fibroblast Growth Factor Receptor 1,B Fms-Like Tyrosine Kinase 2,Flt-2,N-Sam,Proto-Oncogene C-Fgr Ec: 2.7.10.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Fgfr1, Bfgfr, Cek, Fgfbr, Flg, Flt2, Hbgfr Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: De3 Star
symmetry	Space Group: C 1 2 1	R_factor 0.178 R_Free 0.223
crystal cell	length a length b length c angle alpha angle beta angle gamma 208.494 58.925 65.935 90.00 107.59 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	9ES, EDO, SO4	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	H3B-6527 Is a Potent and Selective Inhibitor of FGFR4 in FGF19-Driven Hepatocellular Carcinoma., Joshi JJ, Coffey H, Corcoran E, Tsai J, Huang CL, Ichikawa K, Prajapati S, Hao MH, Bailey S, Wu J, Rimkunas V, Karr C, Subramanian V, Kumar P, MacKenzie C, Hurley R, Satoh T, Yu K, Park E, Rioux N, Kim A, Lai WG, Yu L, Zhu P, Buonamici S, Larsen N, Fekkes P, Wang J, Warmuth M, Reynolds DJ, Smith PG, Selvaraj A, Cancer Res. 2017 Dec 15;77(24):6999-7013. doi: 10.1158/0008-5472.CAN-17-1865. PMID:29247039

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk] Biological Unit Coordinates (5vnd.pdb1.gz) 54 Kb Biological Unit Coordinates (5vnd.pdb2.gz) 52 Kb Biological Unit Coordinates (5vnd.pdb3.gz) 103 Kb LPC: Ligand-Protein Contacts for 5VND CSU: Contacts of Structural Units for 5VND Structure Factors (704 Kb) Retrieve 5VND in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5VND from S2C, [Save to disk] Re-refined 5vnd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5VND in 3D

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Visual 3D analysis of 5VND

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vnd_A] [5vnd_B] [5vnd] SWISS-PROT database: Domain organization of by SWISSPFAM

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