5VOT Membrane Protein, Metal Transport date May 03, 2017
title Structure Of Ampa Receptor-Tarp Complex
authors S.Chen, Y.Zhao, Y.S.Wang, M.Shekhar, E.Tajkhorshid, E.Gouaux
compound source
Molecule: Glutamate Receptor 2
Chain: A, C, D, B
Synonym: Glur-2,Ampa-Selective Glutamate Receptor 2,Glur-B, Glutamate Receptor Ionotropic,Ampa 2,Glua2;
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Gria2, Glur2
Expression_system: Homo Sapiens
Expression_system_taxid: 9606

Molecule: Voltage-Dependent Calcium Channel Gamma-2 Subunit
Chain: E, F, G, H
Synonym: Neuronal Voltage-Gated Calcium Channel Gamma-2 Sub Stargazin,Transmembrane Ampar Regulatory Protein Gamma-2,Ta 2;
Engineered: Yes

Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Cacng2, Stg
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B, C, D


F, E, H, G


Primary referenceActivation and Desensitization Mechanism of AMPA Receptor-TARP Complex by Cryo-EM., Chen S, Zhao Y, Wang Y, Shekhar M, Tajkhorshid E, Gouaux E, Cell. 2017 Sep 7;170(6):1234-1246.e14. doi: 10.1016/j.cell.2017.07.045. Epub 2017, Aug 17. PMID:28823560
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (330 Kb) [Save to disk]
  • Biological Unit Coordinates (5vot.pdb1.gz) 311 Kb
  • CSU: Contacts of Structural Units for 5VOT
  • Retrieve 5VOT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VOT from S2C, [Save to disk]
  • View 5VOT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5VOT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vot_F] [5vot_C] [5vot_G] [5vot_A] [5vot_E] [5vot_D] [5vot_H] [5vot_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5VOT
  • Community annotation for 5VOT at PDBWiki (http://pdbwiki.org)

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