5VRG Transferase date May 10, 2017
title Structural Insights Into Lipoprotein N-Acylation By Escheric Apolipoprotein N-Acyltransferase
authors J.M.Murray, C.L.Noland
compound source
Molecule: Apolipoprotein N-Acyltransferase
Chain: A
Synonym: Alp N-Acyltransferase,Copper Homeostasis Protein C
Ec: 2.3.1.-
Engineered: Yes
 Organism_scientific: Escherichia Coli (Strain K12)
Organism_taxid: 83333
Strain: K12
Gene: Lnt, Cute, B0657, Jw0654
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.212 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.764 158.026 44.763 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.52 Å
ligand CL, LNK, OLC, PLM enzyme Transferase E.C.2.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural insights into lipoprotein N-acylation by Escherichia coli apolipoprotein N-acyltransferase., Noland CL, Kattke MD, Diao J, Gloor SL, Pantua H, Reichelt M, Katakam AK, Yan D, Kang J, Zilberleyb I, Xu M, Kapadia SB, Murray JM, Proc Natl Acad Sci U S A. 2017 Jul 25;114(30):E6044-E6053. doi:, 10.1073/pnas.1707813114. Epub 2017 Jul 11. PMID:28698362
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (167 Kb) [Save to disk]
  • Biological Unit Coordinates (5vrg.pdb1.gz) 161 Kb
  • LPC: Ligand-Protein Contacts for 5VRG
  • CSU: Contacts of Structural Units for 5VRG
  • Structure Factors (587 Kb)
  • Retrieve 5VRG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VRG from S2C, [Save to disk]
  • Re-refined 5vrg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5VRG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5VRG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vrg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5VRG
  • Community annotation for 5VRG at PDBWiki (http://pdbwiki.org)

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