5VXY Protein Fibril date May 24, 2017
title Cryo-Em Reconstruction Of Pak Pilus From Pseudomonas Aerugin
authors F.Wang, T.Osinksi, A.Orlova, T.Altindal, L.Craig, E.H.Egelman
compound source
Molecule: Fimbrial Protein
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R
Synonym: Type Iv Pilin, Pilin
Organism_scientific: Pseudomonas Aeruginosa Pak
Organism_taxid: 1009714
Strain: Pak2pfs
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 8.00 Å
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, E, Q, M, C, L, A, J, O, P, B, H, D, R, I, G, U


Primary referenceCryoelectron Microscopy Reconstructions of the Pseudomonas aeruginosa and Neisseria gonorrhoeae Type IV Pili at Sub-nanometer Resolution., Wang F, Coureuil M, Osinski T, Orlova A, Altindal T, Gesbert G, Nassif X, Egelman EH, Craig L, Structure. 2017 Sep 5;25(9):1423-1435.e4. doi: 10.1016/j.str.2017.07.016. PMID:28877506
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (383 Kb) [Save to disk]
  • Biological Unit Coordinates (5vxy.pdb1.gz) 379 Kb
  • CSU: Contacts of Structural Units for 5VXY
  • Retrieve 5VXY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VXY from S2C, [Save to disk]
  • View 5VXY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5VXY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vxy_J] [5vxy_A] [5vxy_I] [5vxy_P] [5vxy_M] [5vxy_N] [5vxy_F] [5vxy_C] [5vxy_R] [5vxy_L] [5vxy_K] [5vxy_E] [5vxy_S] [5vxy_H] [5vxy_D] [5vxy_G] [5vxy_T] [5vxy_U] [5vxy_O] [5vxy_B] [5vxy_Q]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5VXY
  • Community annotation for 5VXY at PDBWiki (http://pdbwiki.org)

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