5W0C	Oxidoreductase Oxidoreductase Inhibitor	date	May 30, 2017
title	Cytochrome P450 (Cyp) 2c9 Tca007 Inhibitor Complex
authors	E.F.Johnson, M.H.Hsu
compound		source
Molecule: Cytochrome P450 2c9 Chain: A Fragment: Unp Residues 23-489 Synonym: (R)-Limonene 6-Monooxygenase,(S)-Limonene 6-Monoox (S)-Limonene 7-Monooxygenase,Cypiic9,Cholesterol 25-Hydroxy Cytochrome P-450mp,Cytochrome P450 Mp-4,Cytochrome P450 Mp- Cytochrome P450 Pb-1,S-Mephenytoin 4-Hydroxylase; Ec: 1.14.13.-,1.14.13.80,1.14.13.48,1.14.13.49,1.14.99.38 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cyp2c9, Cyp2c10 Expression_system: Escherichia Coli Dh5[Alpha] Expression_system_taxid: 668369 Expression_system_strain: Dh5[Alpha] Expression_system_vector_type: Plasmid Expression_system_plasmid: Pcwori
symmetry	Space Group: H 3	R_factor 0.182 R_Free 0.226
crystal cell	length a length b length c angle alpha angle beta angle gamma 91.394 91.394 169.225 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	9W6, GOL, HEM	enzyme	Oxidoreductase E.C.1.14.13 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Determinants of the Inhibition of DprE1 and CYP2C9 by Antitubercular Thiophenes., Liu R, Lyu X, Batt SM, Hsu MH, Harbut MB, Vilcheze C, Cheng B, Ajayi K, Yang B, Yang Y, Guo H, Lin C, Gan F, Wang C, Franzblau SG, Jacobs WR Jr, Besra GS, Johnson EF, Petrassi M, Chatterjee AK, Futterer K, Wang F, Angew Chem Int Ed Engl. 2017 Aug 16. doi: 10.1002/anie.201707324. PMID:28815830

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk] Biological Unit Coordinates (5w0c.pdb1.gz) 81 Kb LPC: Ligand-Protein Contacts for 5W0C CSU: Contacts of Structural Units for 5W0C Structure Factors (591 Kb) Retrieve 5W0C in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5W0C from S2C, [Save to disk]

View 5W0C in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5W0C

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5w0c_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5W0C

Community annotation for 5W0C at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---