5W68 Membrane Protein date Jun 16, 2017
title Type II Secretin From Enteropathogenic Escherichia Coli - Gs
authors I.D.Hay, M.J.Belousoff, R.Dunstan, R.Bamert, T.Lithgow
compound source
Molecule: Putative Type II Secretion Protein
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O
Fragment: Unp Residues 282-668
Engineered: Yes
Organism_scientific: Escherichia Coli O127:H6 (Strain E2348 Epec);
Organism_taxid: 574521
Strain: E234869 Epec
Gene: Gspd, E2348c_3249
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C43
Expression_system_vector_type: Pet20b
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.30 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, O, J, N, K, E, B, H, M, C, D, I, G, L


Primary referenceThe structure and membrane topography of the Vibrio-type secretin complex from the T2SS of enteropathogenic Escherichia coli (EPEC)., Hay ID, Belousoff MJ, Dunstan RA, Bamert RS, Lithgow T, J Bacteriol. 2017 Oct 30. pii: JB.00521-17. doi: 10.1128/JB.00521-17. PMID:29084860
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (711 Kb) [Save to disk]
  • Biological Unit Coordinates (5w68.pdb1.gz) 707 Kb
  • CSU: Contacts of Structural Units for 5W68
  • Retrieve 5W68 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W68 from S2C, [Save to disk]
  • View 5W68 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5W68
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w68_A] [5w68_E] [5w68_H] [5w68_G] [5w68_C] [5w68_M] [5w68_D] [5w68_F] [5w68_K] [5w68_B] [5w68_O] [5w68_J] [5w68_L] [5w68_I] [5w68_N]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5W68
  • Community annotation for 5W68 at PDBWiki (http://pdbwiki.org)

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