5W7B Hydrolase date Jun 19, 2017
title Rabbit Acyloxyacyl Hydrolase (Aoah), Proteolytically Process Mutant, With Lps
authors A.Gorelik, K.Illes, B.Nagar
compound source
Molecule: Acyloxyacyl Hydrolase Small Subunit
Chain: A, B
Fragment: Residues 23-153
Ec: 3.1.1.77
Engineered: Yes
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Gene: Aoah
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: Acyloxyacyl Hydrolase Large Subunit
Chain: C, D
Fragment: Residues 154-575
Ec: 3.1.1.77
Engineered: Yes
Mutation: Yes

Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Gene: Aoah
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: P 21 21 2
R_factor 0.185 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.522 138.806 89.530 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand 1PE, CA, FTT, FUC, GCS, KDO, MES, MYR, NAG, PA1, PEG, PGE, PO4, SO4 enzyme Hydrolase E.C.3.1.1.77 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


Primary referenceCrystal structure of the mammalian lipopolysaccharide detoxifier., Gorelik A, Illes K, Nagar B, Proc Natl Acad Sci U S A. 2018 Jan 17. pii: 1719834115. doi:, 10.1073/pnas.1719834115. PMID:29343645
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (365 Kb) [Save to disk]
  • Biological Unit Coordinates (5w7b.pdb1.gz) 178 Kb
  • Biological Unit Coordinates (5w7b.pdb2.gz) 173 Kb
  • LPC: Ligand-Protein Contacts for 5W7B
  • CSU: Contacts of Structural Units for 5W7B
  • Structure Factors (919 Kb)
  • Retrieve 5W7B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W7B from S2C, [Save to disk]
  • View 5W7B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5W7B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w7b_B] [5w7b_C] [5w7b_A] [5w7b_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5W7B
  • Community annotation for 5W7B at PDBWiki (http://pdbwiki.org)

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