5WB2	Membrane Protein	date	Jun 27, 2017
title	Us28 Bound To Engineered Chemokine Cx3cl1.35 And Nanobodies
authors	K.M.Jude, J.S.Burg, N.Tsutsumi, T.F.Miles, K.C.Garcia
compound		source
Molecule: Envelope Protein Us28, Nanobody 7 Fusion Protein Chain: A Synonym: Us28 Protein Engineered: Yes		Organism_scientific: Human Cytomegalovirus, Lama Glama Organism_common: Hhv-5, Llama Organism_taxid: 10359, 9844 Gene: Us28 Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: Hek293f
Molecule: Cx3cl1 Protein Chain: B Synonym: Engineered Chemokine Cx3cl1.35 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cx3cl1 Expression_system: Trichoplusia Ni Expression_system_common: Cabbage Looper Expression_system_taxid: 7111
Molecule: Nanobody B1 Chain: D Engineered: Yes		Organism_scientific: Synthetic Construct Organism_taxid: 32630 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 2	R_factor 0.252 R_Free 0.296
crystal cell	length a length b length c angle alpha angle beta angle gamma 47.170 128.940 127.740 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.50 Å
ligand	CLR, MES, OLC, PCA, YCM, ZN	enzyme
Gene Ontology	Chain Function Process Component A B
Primary reference	Viral GPCR US28 can signal in response to chemokine agonists of nearly unlimited structural degeneracy., Miles TF, Spiess K, Jude KM, Tsutsumi N, Burg JS, Ingram JR, Waghray D, Hjorto GM, Larsen O, Ploegh HL, Rosenkilde MM, Garcia KC, Elife. 2018 Jun 8;7. pii: 35850. doi: 10.7554/eLife.35850. PMID:29882741

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk] Biological Unit Coordinates (5wb2.pdb1.gz) 100 Kb LPC: Ligand-Protein Contacts for 5WB2 CSU: Contacts of Structural Units for 5WB2 Structure Factors (96 Kb) Retrieve 5WB2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5WB2 from S2C, [Save to disk]

View 5WB2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5WB2

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1t5wb2, region B:1-92 [Jmol] [rasmolscript] [script source]     - Domain d1o5wb2, region B:1299-1410 [Jmol] [rasmolscript] [script source]     - Domain d1n5wb2, region B:147-809 [Jmol] [rasmolscript] [script source]     - Domain d1r5wb2, region B:31-120 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5wb2_D] [5wb2_A] [5wb2_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5WB2

Community annotation for 5WB2 at PDBWiki (http://pdbwiki.org)

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