5WDA Protein Transport date Jul 04, 2017
title Structure Of The Pulg Pseudopilus
authors A.Lopez-Castilla, J.L.Thomassin, B.Bardiaux, W.Zheng, M.Nivaskum M.Nilges, E.H.Egelman, N.Izadi-Pruneyre, O.Francetic
compound source
Molecule: General Secretion Pathway Protein G
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R V, W, X, Y;
Fragment: Unp Residues 7-140
Synonym: General Secretion Pathway Protein Gspg
Engineered: Yes
Organism_scientific: Klebsiella Oxytoca
Organism_taxid: 571
Gene: Pulg, Ab185_31145, Samea2273639_02747
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 5.00 Å
ligand CA, MEA enzyme
Gene
Ontology
ChainFunctionProcessComponent
S, F, T, N, K, Y, E, V, Q, M, C, L, A, J, O, W, X, P, B, H, D, R, I, G, U


Primary referenceStructure of the calcium-dependent type 2 secretion pseudopilus., Lopez-Castilla A, Thomassin JL, Bardiaux B, Zheng W, Nivaskumar M, Yu X, Nilges M, Egelman EH, Izadi-Pruneyre N, Francetic O, Nat Microbiol. 2017 Oct 9. doi: 10.1038/s41564-017-0041-2. PMID:28993624
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (873 Kb) [Save to disk]
  • Biological Unit Coordinates (5wda.pdb1.gz) 862 Kb
  • LPC: Ligand-Protein Contacts for 5WDA
  • CSU: Contacts of Structural Units for 5WDA
  • Retrieve 5WDA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WDA from S2C, [Save to disk]
  • View 5WDA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WDA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wda_J] [5wda_W] [5wda_N] [5wda_D] [5wda_I] [5wda_X] [5wda_V] [5wda_B] [5wda_P] [5wda_Y] [5wda_C] [5wda_S] [5wda_F] [5wda_H] [5wda_K] [5wda_R] [5wda_T] [5wda_G] [5wda_L] [5wda_M] [5wda_E] [5wda_Q] [5wda_O] [5wda_A] [5wda_U]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WDA
  • Community annotation for 5WDA at PDBWiki (http://pdbwiki.org)

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