5WFB Protein Transport date Jul 11, 2017
title Tepsin Tenth Domain 1-136.
authors T.L.Archuleta, L.P.Jackson
compound source
Molecule: Ap-4 Complex Accessory Subunit Tepsin
Chain: A, B
Fragment: Unp Residues 1-140
Synonym: Enth Domain-Containing Protein 2,Epsin For Ap-4,Te
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tepsin, C17orf56, Enthd2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)Plyss
Expression_system_plasmid: Pgex-6p1
symmetry Space Group: C 2 2 21
R_factor 0.156 R_Free 0.185
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.870 84.750 80.850 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.38 Å
Primary referenceStructure and evolution of ENTH and VHS/ENTH-like domains in tepsin., Archuleta TL, Frazier MN, Monken AE, Kendall AK, Harp J, McCoy AJ, Creanza N, Jackson LP, Traffic. 2017 Jul 10. doi: 10.1111/tra.12499. PMID:28691777
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk]
  • Biological Unit Coordinates (5wfb.pdb1.gz) 62 Kb
  • Biological Unit Coordinates (5wfb.pdb2.gz) 62 Kb
  • CSU: Contacts of Structural Units for 5WFB
  • Structure Factors (1532 Kb)
  • Retrieve 5WFB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WFB from S2C, [Save to disk]
  • Re-refined 5wfb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5WFB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WFB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wfb_A] [5wfb_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WFB
  • Community annotation for 5WFB at PDBWiki (http://pdbwiki.org)

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