5WLN Membrane Protein date Jul 27, 2017
title Cryo-Em Structure Of The T2ss Secretin Xcpq From Pseudomonas Aeruginosa
authors I.D.Hay, M.J.Belousoff, T.J.Lithgow
compound source
Molecule: Type II Secretion System Protein D
Chain: G, O, A, B, C, D, E, F, H, I, J, K, L, M, N
Fragment: Unp Residues 35-658
Synonym: T2ss Protein D,General Secretion Pathway Protein D
Engineered: Yes
 Organism_scientific: Pseudomonas Aeruginosa (Strain Atcc 15 22644 Cip 104116 Jcm 14847 Lmg 12228 1c Prs 101
Organism_taxid: 208964
Strain: Atcc 15692 Dsm 22644 Cip 104116 Jcm 14847 L 1c Prs 101 Pao1;
Gene: Xcpq, Pa3105
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: C43
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.57 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, O, J, N, K, E, B, H, M, C, D, I, G, L


Primary referenceStructural Basis of Type 2 Secretion System Engagement between the Inner and Outer Bacterial Membranes., Hay ID, Belousoff MJ, Lithgow T, MBio. 2017 Oct 17;8(5). pii: e01344-17. doi: 10.1128/mBio.01344-17. PMID:29042496
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (810 Kb) [Save to disk]
  • Biological Unit Coordinates (5wln.pdb1.gz) 795 Kb
  • CSU: Contacts of Structural Units for 5WLN
  • Retrieve 5WLN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WLN from S2C, [Save to disk]
    • View 5WLN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5WLN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wln_C] [5wln_A] [5wln_G] [5wln_I] [5wln_L] [5wln_F] [5wln_J] [5wln_E] [5wln_O] [5wln_K] [5wln_B] [5wln_M] [5wln_D] [5wln_N] [5wln_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5WLN
  • Community annotation for 5WLN at PDBWiki (http://pdbwiki.org)

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