5WOA Membrane Protein date Aug 01, 2017
title Crystal Structure Of Transient Receptor Potential (Trp) Chan In The Presence Of Gadolinium
authors A.K.Singh, K.Saotome, A.I.Sobolevsky
compound source
Molecule: Transient Receptor Potential Cation Channel Subfa Member 6;
Chain: A
Synonym: Trpv6,Calcium Transport Protein 1,Cat1,Epithelial Channel 2,Ecac2;
Engineered: Yes
 Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Trpv6
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 4 21 2
R_factor 0.271 R_Free 0.316
crystal
cell
length a length b length c angle alpha angle beta angle gamma
146.077 146.077 116.007 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.90 Å
ligand GD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSwapping of transmembrane domains in the epithelial calcium channel TRPV6., Singh AK, Saotome K, Sobolevsky AI, Sci Rep. 2017 Sep 6;7(1):10669. doi: 10.1038/s41598-017-10993-9. PMID:28878326
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (5woa.pdb1.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 5WOA
  • CSU: Contacts of Structural Units for 5WOA
  • Structure Factors (397 Kb)
  • Retrieve 5WOA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WOA from S2C, [Save to disk]
    • View 5WOA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5WOA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5woa_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5WOA
  • Community annotation for 5WOA at PDBWiki (http://pdbwiki.org)

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