5WQ8 Protein Transport date Nov 23, 2016
title Cryoem Structure Of Type II Secretion System Secretin Gspd I Cholerae
authors Z.Yan, M.Yin, X.Li
compound source
Molecule: Type II Secretion System Protein D
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O
Synonym: T2ss Secretin Gspd
Engineered: Yes
 Organism_scientific: Vibrio Cholerae O1 Biovar El Tor Str.
Organism_taxid: 243277
Strain: N16961
Gene: Epsd, Vc_2733
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.26 Å
Gene VC
Gene
Ontology
ChainFunctionProcessComponent
F, A, O, J, N, K, E, B, H, M, C, D, I, G, L


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1131 Kb) [Save to disk]
  • Biological Unit Coordinates (5wq8.pdb1.gz) 1117 Kb
  • CSU: Contacts of Structural Units for 5WQ8
  • Retrieve 5WQ8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WQ8 from S2C, [Save to disk]
    • View 5WQ8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5WQ8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wq8_C] [5wq8_M] [5wq8_E] [5wq8_I] [5wq8_H] [5wq8_N] [5wq8_L] [5wq8_D] [5wq8] [5wq8_B] [5wq8_A] [5wq8_F] [5wq8_G] [5wq8_K] [5wq8_J] [5wq8_O]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5WQ8
  • Community annotation for 5WQ8 at PDBWiki (http://pdbwiki.org)

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