OCA Atlas for 5WUX

5WUX

Immune System

date

Dec 21, 2016

title

Tnfalpha-Certolizumab Fab

authors

Y.S.Heo, J.U.Lee

compound

source

Molecule: Heavy
Chain: A, C, H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli-Pichia Pastoris Shuttle Pppb1gap_s;
Expression_system_taxid: 1182034

Molecule: Light
Chain: B, D, L
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli-Pichia Pastoris Shuttle Ppparg4;
Expression_system_taxid: 1182032

Molecule: Tumor Necrosis Factor Alpha
Chain: E, F, G
Fragment: Unp Residues 76-232
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnf
Expression_system: Escherichia Coli-Pichia Pastoris Shuttle Ppparg4;
Expression_system_taxid: 1182032

symmetry

Space Group: C 1 2 1

R_factor

0.226

R_Free

0.266

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
148.592	207.219	112.631	90.00	118.81	90.00

method

X-Ray Diffraction

resolution

2.90 Å

Gene
Ontology

Chain	Function	Process	Component
F, G, E

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (538 Kb) [Save to disk]

Biological Unit Coordinates (5wux.pdb1.gz) 175 Kb

Biological Unit Coordinates (5wux.pdb2.gz) 177 Kb

Biological Unit Coordinates (5wux.pdb3.gz) 181 Kb

CSU: Contacts of Structural Units for 5WUX

Structure Factors (1721 Kb)

Retrieve 5WUX in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5WUX from S2C, [Save to disk]

Re-refined 5wux structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5WUX in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5WUX

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5wux_F] [5wux_B] [5wux_E] [5wux_C] [5wux_H] [5wux_A] [5wux_G] [5wux_L] [5wux_D]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Other resources with information on 5WUX

Community annotation for 5WUX at PDBWiki (http://pdbwiki.org)

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