5X23 Oxidoreductase date Jan 30, 2017
title Crystal Structure Of Cyp2c9 Genetic Variant A477t (30) In C With Multiple Losartan Molecules
authors K.Maekawa, M.Adachi, M.B.Shah
compound source
Molecule: Cytochrome P450 2c9
Chain: A
Fragment: Unp Residues 24-490
Synonym: (R)-Limonene 6-Monooxygenase,(S)-Limonene 6-Monoox (S)-Limonene 7-Monooxygenase,Cypiic9,Cholesterol 25-Hydroxy Cytochrome P-450mp,Cytochrome P450 Mp-4,Cytochrome P450 Mp- Cytochrome P450 Pb-1,S-Mephenytoin 4-Hydroxylase;
Ec: 1.14.13.-,1.14.13.80,1.14.13.48,1.14.13.49,1.14.99.38
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cyp2c9, Cyp2c10
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta2
symmetry Space Group: I 2 2 2
R_factor 0.217 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.952 142.273 161.831 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand HEM, K, LSN, PO4 enzyme Oxidoreductase E.C.1.14.13 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Basis of Single-Nucleotide Polymorphisms in Cytochrome P450 2C9., Maekawa K, Adachi M, Matsuzawa Y, Zhang Q, Kuroki R, Saito Y, Shah MB, Biochemistry. 2017 Oct 17;56(41):5476-5480. doi: 10.1021/acs.biochem.7b00795., Epub 2017 Oct 3. PMID:28972767
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk]
  • Biological Unit Coordinates (5x23.pdb1.gz) 81 Kb
  • LPC: Ligand-Protein Contacts for 5X23
  • CSU: Contacts of Structural Units for 5X23
  • Structure Factors (1680 Kb)
  • Retrieve 5X23 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5X23 from S2C, [Save to disk]
  • View 5X23 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5X23
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5x23_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5X23
  • Community annotation for 5X23 at PDBWiki (http://pdbwiki.org)

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