5X33 Membrane Protein date Feb 03, 2017
title Leukotriene B4 Receptor Blt1 In Complex With Biil260
authors T.Hori, K.Hirata, K.Yamashita, Y.Kawano, M.Yamamoto, S.Yokoyama
compound source
Molecule: Ltb4 Receptor,Lysozyme,Ltb4 Receptor
Chain: A
Synonym: Leukotriene B4 Receptor
Ec: 3.2.1.17
Engineered: Yes
Mutation: Yes
Other_details: Chimera Protein Of Unp Residues 15-213 From Unp Residues 2-161 From A0a097j792, Unp Residues 214-348 Fr
Organism_scientific: Cavia Porcellus, Enterobacteria Phage
Organism_common: Guinea Pig
Organism_taxid: 10141, 697289
Gene: Ltb4r, E, Rb55_p125
Expression_system: Komagataella Pastoris Cbs 7435
Expression_system_common: Pichia Pastoris
Expression_system_taxid: 4922
symmetry Space Group: P 2 21 21
R_factor 0.248 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.560 77.620 135.530 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.70 Å
ligand 7Y9 enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNa(+)-mimicking ligands stabilize the inactive state of leukotriene B4 receptor BLT1., Hori T, Okuno T, Hirata K, Yamashita K, Kawano Y, Yamamoto M, Hato M, Nakamura M, Shimizu T, Yokomizo T, Miyano M, Yokoyama S, Nat Chem Biol. 2018 Jan 8. pii: nchembio.2547. doi: 10.1038/nchembio.2547. PMID:29309055
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (5x33.pdb1.gz) 139 Kb
  • LPC: Ligand-Protein Contacts for 5X33
  • CSU: Contacts of Structural Units for 5X33
  • Structure Factors (143 Kb)
  • Retrieve 5X33 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5X33 from S2C, [Save to disk]
  • View 5X33 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5X33
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5x33_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5X33
  • Community annotation for 5X33 at PDBWiki (http://pdbwiki.org)

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