5X5Y Membrane Protein date Feb 18, 2017
title A Membrane Protein Complex
authors Q.Luo, X.Yang, Y.Huang
compound source
Molecule: Probable Atp-Binding Component Of Abc Transporter
Chain: B, A
Engineered: Yes
Organism_scientific: Pseudomonas Aeruginosa Pao1
Organism_taxid: 208964
Strain: Pao1
Gene: Pa4461
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Uncharacterized Protein
Chain: G
Synonym: Lptg
Engineered: Yes

Organism_scientific: Pseudomonas Aeruginosa Pao1
Organism_taxid: 208964
Strain: Pao1
Gene: Pa3827
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)

Molecule: Uncharacterized Protein
Chain: F
Fragment: Unp Residues 1-362
Synonym: Lptf
Engineered: Yes

Organism_scientific: Pseudomonas Aeruginosa Pao1
Organism_taxid: 208964
Strain: Pao1
Gene: Pa3828
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.269 R_Free 0.304
crystal
cell
length a length b length c angle alpha angle beta angle gamma
69.952 159.868 166.786 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.47 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


F


G


Primary referenceStructural basis for lipopolysaccharide extraction by ABC transporter LptB2FG., Luo Q, Yang X, Yu S, Shi H, Wang K, Xiao L, Zhu G, Sun C, Li T, Li D, Zhang X, Zhou M, Huang Y, Nat Struct Mol Biol. 2017 May;24(5):469-474. doi: 10.1038/nsmb.3399. Epub 2017, Apr 10. PMID:28394325
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (190 Kb) [Save to disk]
  • Biological Unit Coordinates (5x5y.pdb1.gz) 185 Kb
  • CSU: Contacts of Structural Units for 5X5Y
  • Structure Factors (624 Kb)
  • Retrieve 5X5Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5X5Y from S2C, [Save to disk]
  • Re-refined 5x5y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5X5Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5X5Y
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5x5y_A] [5x5y] [5x5y_F] [5x5y_B] [5x5y_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5X5Y
  • Community annotation for 5X5Y at PDBWiki (http://pdbwiki.org)

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