5XEZ Signaling Protein date Apr 06, 2017
title Structure Of The Full-Length Glucagon Class B G Protein-Coup Receptor
authors H.Zhang, A.Qiao, D.Yang, L.Yang, A.Dai, C.De Graaf, S.Reedtz-Runge V.Dharmarajan, H.Zhang, G.W.Han, T.Grant, R.Sierra, U.Weierstall G.Nelson, W.Liu, Y.Wu, L.Ma, X.Cai, G.Lin, X.Wu, Z.Geng, Y.Dong, G.S P.Griffin, J.Lau, V.Cherezov, H.Yang, M.Hanson, R.Stevens, H.Jian Q.Zhao, B.Wu
compound source
Molecule: Glucagon Receptor,Endolysin,Glucagon Receptor
Chain: A, B
Fragment: Unp Residues 27-256,Unp Residues 2-161,Unp Residu 432;
Synonym: Gl-R,Lysis Protein,Lysozyme,Muramidase,Gl-R
Ec: 3.2.1.17
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens, Enterobacteria Phage T4
Organism_common: Human
Organism_taxid: 9606, 10665
Gene: Gcgr, E, T4tp126
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus

Molecule: Antibody, Mab1, Heavy Chain
Chain: C, H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293

Molecule: Antibody, Mab1, Light Chain
Chain: D, L
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
symmetry Space Group: P 1 21 1
R_factor 0.210 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.610 245.330 96.150 90.00 90.01 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand 97V, NAG enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (606 Kb) [Save to disk]
  • Biological Unit Coordinates (5xez.pdb1.gz) 309 Kb
  • Biological Unit Coordinates (5xez.pdb2.gz) 293 Kb
  • LPC: Ligand-Protein Contacts for 5XEZ
  • CSU: Contacts of Structural Units for 5XEZ
  • Structure Factors (1985 Kb)
  • Retrieve 5XEZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XEZ from S2C, [Save to disk]
  • Re-refined 5xez structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5XEZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XEZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xez] [5xez_D] [5xez_A] [5xez_C] [5xez_B] [5xez_H] [5xez_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XEZ
  • Community annotation for 5XEZ at PDBWiki (http://pdbwiki.org)

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