5XJ5 Transferase date Apr 30, 2017
title Crystal Structure Of Plsy (Ygih), An Integral Membrane Glyce Phosphate Acyltransferase - The Monoacylglycerol Form
authors Z.Li, D.Li
compound source
Molecule: Glycerol-3-Phosphate Acyltransferase
Chain: A
Synonym: Acyl-Po4 G3p Acyltransferase,Acyl-Phosphate--Glyce Phosphate Acyltransferase,G3p Acyltransferase,Gpat,Lysophos Acid Synthase,Lpa Synthase;
Ec: 2.3.1.-
Engineered: Yes
Organism_scientific: Aquifex Aeolicus
Organism_taxid: 224324
Strain: Vf5
Gene: Plsy, Aq_676
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P3eg
symmetry Space Group: I 2 2 2
R_factor 0.188 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.675 83.437 107.588 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.48 Å
ligand 78M, FME, GLY, PGE, SO4 enzyme Transferase E.C.2.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural insights into the committed step of bacterial phospholipid biosynthesis., Li Z, Tang Y, Wu Y, Zhao S, Bao J, Luo Y, Li D, Nat Commun. 2017 Nov 22;8(1):1691. doi: 10.1038/s41467-017-01821-9. PMID:29167463
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (5xj5.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 5XJ5
  • CSU: Contacts of Structural Units for 5XJ5
  • Structure Factors (1761 Kb)
  • Retrieve 5XJ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XJ5 from S2C, [Save to disk]
  • View 5XJ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XJ5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xj5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XJ5
  • Community annotation for 5XJ5 at PDBWiki (http://pdbwiki.org)

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