5XJJ Transport Protein date May 02, 2017
title Crystal Structure Of A Mate Family Protein
authors Y.Tanaka, T.Tsukazaki, S.Iwaki
compound source
Molecule: Multi Drug Efflux Transporter
Chain: A
Engineered: Yes
Organism_scientific: Camelina Sativa
Organism_taxid: 90675
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: Smd1163
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppic9k
symmetry Space Group: P 21 21 21
R_factor 0.239 R_Free 0.296
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.710 69.890 117.600 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand OLC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • xenobiotic transmembrane tra...


  • Primary referenceCrystal Structure of a Plant Multidrug and Toxic Compound Extrusion Family Protein., Tanaka Y, Iwaki S, Tsukazaki T, Structure. 2017 Sep 5;25(9):1455-1460.e2. doi: 10.1016/j.str.2017.07.009. PMID:28877507
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (5xjj.pdb1.gz) 140 Kb
  • LPC: Ligand-Protein Contacts for 5XJJ
  • CSU: Contacts of Structural Units for 5XJJ
  • Structure Factors (112 Kb)
  • Retrieve 5XJJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XJJ from S2C, [Save to disk]
  • View 5XJJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XJJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xjj_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XJJ
  • Community annotation for 5XJJ at PDBWiki (http://pdbwiki.org)

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