5XJK Viral Protein date May 02, 2017
title Nmr Structure And Localization Of A Large Fragment Of The Sa Fusion Protein: Implications In Viral Cell Fusion
authors S.Bhattacharjya, D.Chatterjee
compound source
Molecule: Spike Protein S2
Chain: A
Fragment: Unp Residues 758-821
Engineered: Yes
 Organism_scientific: Human Sars Coronavirus
Organism_common: Sars-Cov
Organism_taxid: 227859
Gene: S, 2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR structure and localization of a large fragment of the SARS-CoV fusion protein: Implications in viral cell fusion., Mahajan M, Chatterjee D, Bhuvaneswari K, Pillay S, Bhattacharjya S, Biochim Biophys Acta. 2017 Oct 5;1860(2):407-415. doi:, 10.1016/j.bbamem.2017.10.002. PMID:28988778
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (419 Kb) [Save to disk]
  • Biological Unit Coordinates (5xjk.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 5XJK
  • Original NMR restraints for 5XJK from PDB
  • Retrieve 5XJK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XJK from S2C, [Save to disk]
    • View 5XJK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5XJK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xjk_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5XJK
  • Community annotation for 5XJK at PDBWiki (http://pdbwiki.org)

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