5XMZ Signaling Protein date May 17, 2017
title Verticillium Effector Pevd1
authors X.Liu, R.Zhou
compound source
Molecule: Effector Protein Pevd1
Chain: A
Synonym: Hypersensitive Response-Inducing Protein Pevd1
Engineered: Yes
Organism_scientific: Verticillium Dahliae
Organism_common: Verticillium Wilt
Organism_taxid: 27337
Expression_system: Enterobacteria Phage L1
Expression_system_taxid: 268588
symmetry Space Group: C 2 2 21
R_factor 0.202 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.000 79.489 55.512 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand CA, CL enzyme
Primary referenceThe asparagine-rich protein NRP interacts with the Verticillium effector PevD1 and regulates the subcellular localization of cryptochrome 2., Zhou R, Zhu T, Han L, Liu M, Xu M, Liu Y, Han D, Qiu D, Gong Q, Liu X, J Exp Bot. 2017 Jun 15;68(13):3427-3440. doi: 10.1093/jxb/erx192. PMID:28633330
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (5xmz.pdb1.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 5XMZ
  • CSU: Contacts of Structural Units for 5XMZ
  • Structure Factors (100 Kb)
  • Retrieve 5XMZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XMZ from S2C, [Save to disk]
  • Re-refined 5xmz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5XMZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XMZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xmz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XMZ
  • Community annotation for 5XMZ at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science