5XNO Membrane Protein date May 23, 2017
title Structure Of M-Lhcii And Cp24 Complexes In The Unstacked C2s Psii-Lhcii Supercomplex From Pisum Sativum
authors X.D.Su, J.Ma, X.P.Wei, P.Cao, D.J.Zhu, W.R.Chang, Z.F.Liu, X.Z.Zhan
compound source
Molecule: Chlorophyll A-B Binding Protein 8, Chloroplastic
Chain: 1, 2
Fragment: Unp Residues 37-268
Synonym: Lhcii Type I Cab-8
 Organism_scientific: Pisum Sativum
Organism_common: Garden Pea
Organism_taxid: 3888

Molecule: Chlorophyll A-B Binding Protein, Chloroplastic
Chain: 3
Fragment: Unp Residues 23-265
Organism_scientific: Pisum Sativum
Organism_common: Garden Pea
Organism_taxid: 3888

Molecule: Light Harvesting Chlorophyll Ab-Binding Protein Cp24;
Chain: 4
Organism_scientific: Pisum Sativum
Organism_common: Garden Pea
Organism_taxid: 3888
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.50 Å
ligand BCR, CHL, CLA, LHG, LUT, NEX, XAT enzyme
Gene
Ontology
ChainFunctionProcessComponent
1, 2


3


4


Primary referenceStructure and assembly mechanism of plant C2S2M2-type PSII-LHCII supercomplex., Su X, Ma J, Wei X, Cao P, Zhu D, Chang W, Liu Z, Zhang X, Li M, Science. 2017 Aug 25;357(6353):815-820. doi: 10.1126/science.aan0327. PMID:28839073
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (208 Kb) [Save to disk]
  • Biological Unit Coordinates (5xno.pdb1.gz) 178 Kb
  • LPC: Ligand-Protein Contacts for 5XNO
  • CSU: Contacts of Structural Units for 5XNO
  • Retrieve 5XNO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XNO from S2C, [Save to disk]
    • View 5XNO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5XNO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xno_4] [5xno_3] [5xno_2] [5xno_1]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5XNO
  • Community annotation for 5XNO at PDBWiki (http://pdbwiki.org)

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