5XSY Membrane Protein date Jun 15, 2017
title Structure Of The Nav1.4-Beta1 Complex From Electric Eel
authors Z.Yan, Q.Zhou, J.P.Wu, N.Yan
compound source
Molecule: Sodium Channel Protein
Chain: A
Synonym: Na(+) Channel
Organism_scientific: Electrophorus Electricus
Organism_common: Electric Eel
Organism_taxid: 8005

Molecule: Voltage-Gated Sodium Channel Beta Subunit 1
Chain: B

Organism_scientific: Electrophorus Electricus
Organism_common: Electric Eel
Organism_taxid: 8005
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.00 Å
ligand BMA, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • ion channel activity
  • voltage-gated ion channel ac...
  • voltage-gated sodium channel...
  • cation channel activity
  • sodium channel activity


  • B


    Primary referenceStructure of the Nav1.4-beta1 Complex from Electric Eel., Yan Z, Zhou Q, Wang L, Wu J, Zhao Y, Huang G, Peng W, Shen H, Lei J, Yan N, Cell. 2017 Jul 27;170(3):470-482.e11. doi: 10.1016/j.cell.2017.06.039. Epub 2017 , Jul 20. PMID:28735751
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (223 Kb) [Save to disk]
  • Biological Unit Coordinates (5xsy.pdb1.gz) 214 Kb
  • LPC: Ligand-Protein Contacts for 5XSY
  • CSU: Contacts of Structural Units for 5XSY
  • Retrieve 5XSY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XSY from S2C, [Save to disk]
  • View 5XSY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XSY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xsy_B] [5xsy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XSY
  • Community annotation for 5XSY at PDBWiki (http://pdbwiki.org)

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