5XU1 Transport Protein date Jun 22, 2017
title Structure Of A Non-Canonical Abc Transporter From Streptococ Pneumoniae R6
authors H.B.Yang, Y.L.Jiang, W.T.Hou, M.T.Chen, Y.Chen, C.Z.Zhou
compound source
Molecule: Abc Transporter Atp-Binding Protein
Chain: A, B
Engineered: Yes
Organism_scientific: Streptococcus Pneumoniae (Strain Atcc R6);
Organism_taxid: 171101
Strain: Atcc Baa-255 R6
Gene: Abc-Nbd, Spr0694
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbad

Molecule: Abc Transporter Permeae
Chain: M, S
Synonym: Tmd Of The Abc Trasnporter
Engineered: Yes

Organism_scientific: Streptococcus Pneumoniae (Strain Atcc R6);
Organism_taxid: 171101
Strain: Atcc Baa-255 R6
Gene: Spr0695
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbad
symmetry Space Group: C 2 2 21
R_factor 0.234 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
141.053 154.987 205.892 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


S, M
  • transmembrane transporter ac...


  • Primary referenceStructure of a MacAB-like efflux pump from Streptococcus pneumoniae., Yang HB, Hou WT, Cheng MT, Jiang YL, Chen Y, Zhou CZ, Nat Commun. 2018 Jan 15;9(1):196. doi: 10.1038/s41467-017-02741-4. PMID:29335499
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (192 Kb) [Save to disk]
  • Biological Unit Coordinates (5xu1.pdb1.gz) 186 Kb
  • LPC: Ligand-Protein Contacts for 5XU1
  • CSU: Contacts of Structural Units for 5XU1
  • Structure Factors (669 Kb)
  • Retrieve 5XU1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XU1 from S2C, [Save to disk]
  • View 5XU1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XU1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xu1_A] [5xu1_S] [5xu1_B] [5xu1_M]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XU1
  • Community annotation for 5XU1 at PDBWiki (http://pdbwiki.org)

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