5Y50 Membrane Protein date Aug 06, 2017
title Crystal Structure Of Eukaryotic Mate Transporter Atdtx14
authors H.Miyauchi, T.Kusakizako, T.Nishizawa, R.Ishitani, O.Nureki
compound source
Molecule: Protein Detoxification 14
Chain: A
Fragment: Unp Residues 20-473
Synonym: Atdtx14,Multidrug And Toxic Compound Extrusion Pro Mate Protein 14;
Engineered: Yes
Mutation: Yes
 Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702
Gene: Dtx14, At1g71140, F23n20.13
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 21 21 21
R_factor 0.224 R_Free 0.276
crystal
cell
length a length b length c angle alpha angle beta angle gamma
52.800 86.780 116.430 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for xenobiotic extrusion by eukaryotic MATE transporter., Miyauchi H, Moriyama S, Kusakizako T, Kumazaki K, Nakane T, Yamashita K, Hirata K, Dohmae N, Nishizawa T, Ito K, Miyaji T, Moriyama Y, Ishitani R, Nureki O, Nat Commun. 2017 Nov 21;8(1):1633. doi: 10.1038/s41467-017-01541-0. PMID:29158478
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (5y50.pdb1.gz) 68 Kb
  • CSU: Contacts of Structural Units for 5Y50
  • Structure Factors (262 Kb)
  • Retrieve 5Y50 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Y50 from S2C, [Save to disk]
    • View 5Y50 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5Y50
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5y50_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5Y50
  • Community annotation for 5Y50 at PDBWiki (http://pdbwiki.org)

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