5YLV	Membrane Protein	date	Oct 19, 2017
title	Crystal Structure Of The Gastric Proton Pump Complexed With
authors	K.Abe, K.Irie, H.Nakanishi, Y.Fujiyoshi
compound		source
Molecule: Potassium-Transporting Atpase Alpha Chain 1 Chain: A Synonym: Gastric H(+)K(+) Atpase Subunit Alpha,Proton Pump Ec: 3.6.3.10 Engineered: Yes Mutation: Yes Other_details: Chain A Is N-Terminal Deletion Mutant Starti And Its N-Terminus Has Tev Protease Site. Cleavaged By Tev Glycine Residue Is Left In Front Of Met49.;		Organism_scientific: Sus Scrofa Organism_common: Pig Organism_taxid: 9823 Gene: Atp4a Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293s Gnt1- Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfb-Based
Molecule: Potassium-Transporting Atpase Subunit Beta Chain: B Fragment: Unp Residues 2-290 Synonym: Gastric H(+)K(+) Atpase Subunit Beta Engineered: Yes		Organism_scientific: Sus Scrofa Organism_common: Pig Organism_taxid: 9823 Gene: Atp4b Expression_system: Homo Sapiens Expression_system_taxid: 9606 Expression_system_cell_line: Hek293s Gnt1-
symmetry	Space Group: P 31 2 1	R_factor 0.240 R_Free 0.292
crystal cell	length a length b length c angle alpha angle beta angle gamma 105.050 105.050 368.540 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	8WX, BFD, CE1, MG, NAG, PCW, RB	enzyme	Hydrolase E.C.3.6.3.10 BRENDA
Gene Ontology	Chain Function Process Component A potassium-transporting ATPas... potassium:proton exchanging ... B ATPase activator activity sodium:potassium-exchanging ...
Primary reference	Crystal structures of the gastric proton pump., Abe K, Irie K, Nakanishi H, Suzuki H, Fujiyoshi Y, Nature. 2018 Apr;556(7700):214-218. doi: 10.1038/s41586-018-0003-8. Epub 2018 Apr, 4. PMID:29618813

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (207 Kb) [Save to disk] Biological Unit Coordinates (5ylv.pdb1.gz) 200 Kb LPC: Ligand-Protein Contacts for 5YLV CSU: Contacts of Structural Units for 5YLV Structure Factors (1991 Kb) Retrieve 5YLV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5YLV from S2C, [Save to disk]

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Structure-derived information

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Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ylv_B] [5ylv_A] SWISS-PROT database: Domain organization of by SWISSPFAM

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