5YQQ Transport Protein date Nov 07, 2017
title Crystal Structure Of A Domain-Swapped Dimer Of The Second St Domain Of Lam2
authors J.Tong, Y.J.Im
compound source
Molecule: Membrane-Anchored Lipid-Binding Protein Ysp2
Chain: A, B
Synonym: Lipid Transfer At Contact Site Protein 4,Lipid Tra Protein Anchored At Membrane Contact Sites 3,Yeast Suicide
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Ysp2, Lam2, Ltc4, Ydr326c
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phis2-Thr
symmetry Space Group: P 1
R_factor 0.194 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.862 52.124 53.021 107.81 90.17 105.05
method X-Ray Diffractionresolution 1.90 Å
Primary referenceStructural basis of sterol recognition and nonvesicular transport by lipid transfer proteins anchored at membrane contact sites., Tong J, Manik MK, Im YJ, Proc Natl Acad Sci U S A. 2018 Jan 16. pii: 1719709115. doi:, 10.1073/pnas.1719709115. PMID:29339490
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (5yqq.pdb1.gz) 55 Kb
  • CSU: Contacts of Structural Units for 5YQQ
  • Structure Factors (359 Kb)
  • Retrieve 5YQQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YQQ from S2C, [Save to disk]
  • View 5YQQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5YQQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5yqq_B] [5yqq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5YQQ
  • Community annotation for 5YQQ at PDBWiki (http://pdbwiki.org)

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