5YQR	Transport Protein	date	Nov 07, 2017
title	Crystal Structure Of The Ph-Like Domain Of Lam6
authors	J.Tong, Y.J.Im
compound		source
Molecule: Endolysinmembrane-Anchored Lipid-Binding Protein Fusion Protein; Chain: A Synonym: Lysis Protein,Lysozyme,Muramidase,Lipid Transfer A Site Protein 1,Lipid Transfer Protein Anchored At Membrane Sites 1; Ec: 3.2.1.17 Engineered: Yes Mutation: Yes Other_details: The N-Termial T4 Lysozyme (Residue 2-160) Ta Fusion.The Intact Protein Expressed Is Hexa-Histidine -Thro Cleavage Site - T4 Lysozyme - Lam6 (161-272),The N-Termial Lysozyme (Residue 2-160) Tag Fusion. The Intact Protein Exp Hexa-Histidine -Thrombin Cleavage Site - T4 Lysozyme - Lam6		Organism_scientific: Enterobacteria Phage T4, Saccharomyces Cerevisiae (Strain Atcc 204508 S288c); Organism_common: Bacteriophage T4, Baker'S Yeast Organism_taxid: 10665, 559292 Strain: Atcc 204508 S288c Gene: Lam6, Ltc1, Ylr072w Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Phis-T4l
symmetry	Space Group: P 21 21 21	R_factor 0.218 R_Free 0.266
crystal cell	length a length b length c angle alpha angle beta angle gamma 59.543 60.103 105.600 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.40 Å
ligand	2PE	enzyme	Hydrolase E.C.3.2.1.17 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis of sterol recognition and nonvesicular transport by lipid transfer proteins anchored at membrane contact sites., Tong J, Manik MK, Im YJ, Proc Natl Acad Sci U S A. 2018 Jan 16. pii: 1719709115. doi:, 10.1073/pnas.1719709115. PMID:29339490

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk] Biological Unit Coordinates (5yqr.pdb1.gz) 92 Kb LPC: Ligand-Protein Contacts for 5YQR CSU: Contacts of Structural Units for 5YQR Structure Factors (325 Kb) Retrieve 5YQR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5YQR from S2C, [Save to disk]

View 5YQR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5YQR

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5yqr_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5YQR

Community annotation for 5YQR at PDBWiki (http://pdbwiki.org)

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