5YS0 Transport Protein date Nov 11, 2017
title Crystal Structure Of The Second Starkin Domain Of Lam2 In Co Ergosterol
authors J.Tong, Y.J.Im
compound source
Molecule: Membrane-Anchored Lipid-Binding Protein Ysp2
Chain: A, B, C
Synonym: Lipid Transfer At Contact Site Protein 4,Lipid Tra Protein Anchored At Membrane Contact Sites 3,Yeast Suicide
Engineered: Yes
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
Gene: Ysp2, Lam2, Ltc4, Ydr326c
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phis2-Thr
symmetry Space Group: C 1 2 1
R_factor 0.241 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
189.717 70.315 42.508 90.00 103.14 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand ERG enzyme
Primary referenceStructural basis of sterol recognition and nonvesicular transport by lipid transfer proteins anchored at membrane contact sites., Tong J, Manik MK, Im YJ, Proc Natl Acad Sci U S A. 2018 Jan 16. pii: 1719709115. doi:, 10.1073/pnas.1719709115. PMID:29339490
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (82 Kb) [Save to disk]
  • Biological Unit Coordinates (5ys0.pdb1.gz) 28 Kb
  • Biological Unit Coordinates (5ys0.pdb2.gz) 28 Kb
  • Biological Unit Coordinates (5ys0.pdb3.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 5YS0
  • CSU: Contacts of Structural Units for 5YS0
  • Structure Factors (243 Kb)
  • Retrieve 5YS0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YS0 from S2C, [Save to disk]
  • View 5YS0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5YS0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ys0_C] [5ys0_A] [5ys0_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5YS0
  • Community annotation for 5YS0 at PDBWiki (http://pdbwiki.org)

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