5ZBH Signaling Protein date Feb 11, 2018
title The Crystal Structure Of Human Neuropeptide Y Y1 Receptor Wi 193885
authors Z.Yang, S.Han, Q.Zhao, B.Wu
compound source
Molecule: Neuropeptide Y Receptor Type 1,T4 Lysozyme,Neurop Receptor Type 1;
Chain: A
Fragment: Unp Residues 2-241,Unp Residues 2-161,Unp Residue
Synonym: Npy1-R,Lysis Protein,Lysozyme,Muramidase,Npy1-R
Ec: 3.2.1.17
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens, Enterobacteria Phage T4t
Organism_common: Human
Organism_taxid: 9606, 857277
Gene: Npy1r, Npyr, Npyy1, E, T4tp126
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: C 2 2 21
R_factor 0.222 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.580 126.240 169.820 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand 9AF enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis of ligand binding modes at the neuropeptide Y Y1 receptor., Yang Z, Han S, Keller M, Kaiser A, Bender BJ, Bosse M, Burkert K, Kogler LM, Wifling D, Bernhardt G, Plank N, Littmann T, Schmidt P, Yi C, Li B, Ye S, Zhang R, Xu B, Larhammar D, Stevens RC, Huster D, Meiler J, Zhao Q, Beck-Sickinger AG, Buschauer A, Wu B, Nature. 2018 Apr;556(7702):520-524. doi: 10.1038/s41586-018-0046-x. Epub 2018 Apr, 18. PMID:29670288
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (163 Kb) [Save to disk]
  • Biological Unit Coordinates (5zbh.pdb1.gz) 158 Kb
  • LPC: Ligand-Protein Contacts for 5ZBH
  • CSU: Contacts of Structural Units for 5ZBH
  • Structure Factors (536 Kb)
  • Retrieve 5ZBH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZBH from S2C, [Save to disk]
  • View 5ZBH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZBH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zbh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZBH
  • Community annotation for 5ZBH at PDBWiki (http://pdbwiki.org)

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