5ZJI Membrane Protein date Mar 20, 2018
title Structure Of Photosystem I Supercomplex With Light-Harvestin Complexes I And II
authors X.W.Pan, J.Ma, X.D.Su, P.Cao, Z.F.Liu, X.Z.Zhang, M.Li
compound source
Molecule: Chlorophyll A-B Binding Protein, Chloroplastic
Chain: 1
Organism_scientific: Zea Mays
Organism_common: Maize
Organism_taxid: 4577

Molecule: Chlorophyll A-B Binding Protein, Chloroplastic
Chain: 2

Organism_scientific: Zea Mays
Organism_common: Maize
Organism_taxid: 4577

Molecule: Chlorophyll A-B Binding Protein, Chloroplastic
Chain: 3

Organism_scientific: Zea Mays
Organism_common: Maize
Organism_taxid: 4577

Molecule: Chlorophyll A-B Binding Protein, Chloroplastic
Chain: 4

Organism_scientific: Zea Mays
Organism_common: Maize
Organism_taxid: 4577

Molecule: Photosystem I P700 Chlorophyll A Apoprotein A1
Chain: A
Synonym: Psi-A,Psaa
Ec: 1.97.1.12

Organism_scientific: Zea Mays
Organism_common: Maize
Organism_taxid: 4577

Molecule: Photosystem I P700 Chlorophyll A Apoprotein A2
Chain: B
Synonym: Psi-B,Psab
Ec: 1.97.1.12

Organism_scientific: Zea Mays Subsp. Mays
Organism_common: Maize
Organism_taxid: 381124

Molecule: Photosystem I Subunit Vii
Chain: C

Organism_scientific: Zea Mays Subsp. Mays
Organism_common: Maize
Organism_taxid: 381124

Molecule: Photosystem I Reaction Center Subunit II
Chain: D
Synonym: Photosystem I Reaction Center Subunit II-1 Chlorop

Organism_scientific: Zea Mays
Organism_common: Maize
Organism_taxid: 4577

Molecule: Photosystem I Reaction Center Subunit Iv A
Chain: E

Organism_scientific: Zea Mays
Organism_common: Maize
Organism_taxid: 4577

Molecule: Photosystem I Reaction Center Subunit III
Chain: F

Organism_scientific: Zea Mays
Organism_common: Maize
Organism_taxid: 4577

Molecule: Photosystem I Reaction Center Subunit V
Chain: G

Organism_scientific: Zea Mays
Organism_common: Maize
Organism_taxid: 4577

Molecule: Photosystem I Reaction Center Subunit Vi, Chlorop
Chain: H
Synonym: Psi-H,Light-Harvesting Complex I 11 Kda Protein

Organism_scientific: Zea Mays
Organism_common: Maize
Organism_taxid: 4577

Molecule: Photosystem I Reaction Center Subunit Viii
Chain: I
Synonym: Psi-I

Organism_scientific: Zea Mays
Organism_common: Maize
Organism_taxid: 4577

Molecule: Photosystem I Reaction Center Subunit Ix
Chain: J
Synonym: Psi-J

Organism_scientific: Zea Mays
Organism_common: Maize
Organism_taxid: 4577

Molecule: Photosystem I Reaction Center Subunit Psak
Chain: K
Synonym: Photosystem I Reaction Center6

Organism_scientific: Zea Mays
Organism_common: Maize
Organism_taxid: 4577

Molecule: Photosystem I Reaction Center Subunit Xi
Chain: L

Organism_scientific: Zea Mays
Organism_common: Maize
Organism_taxid: 4577

Molecule: 16kda Membrane Protein
Chain: O

Organism_scientific: Zea Mays
Organism_common: Maize
Organism_taxid: 4577

Molecule: Photosystem I Reaction Center Subunit N
Chain: N

Organism_scientific: Zea Mays
Organism_common: Maize
Organism_taxid: 4577

Molecule: Chlorophyll A-B Binding Protein 1, Chloroplastic
Chain: X, Z
Synonym: Lhcii Type I Cab-1,Lhcp

Organism_scientific: Zea Mays
Organism_common: Maize
Organism_taxid: 4577

Molecule: Chlorophyll A-B Binding Protein, Chloroplastic
Chain: Y
Synonym: Photosystem II Light Harvesting Complex Gene 2.1

Organism_scientific: Zea Mays
Organism_common: Maize
Organism_taxid: 4577
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.30 Å
ligand BCR, CHL, CL0, CLA, DGD, LHG, LMG, LMU, LUT, NEX, PQN, SF4, TPO, XAT enzyme Oxidoreductase E.C.1.97.1.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
1


2


3


4


A
  • electron transfer activity


  • B
  • electron transfer activity


  • C


    D


    E


    F


    G


    H


    I


    J


    K


    L


    N


    O


    Y, Z, X


    Primary referenceStructure of the maize photosystem I supercomplex with light-harvesting complexes I and II., Pan X, Ma J, Su X, Cao P, Chang W, Liu Z, Zhang X, Li M, Science. 2018 Jun 8;360(6393):1109-1113. doi: 10.1126/science.aat1156. PMID:29880686
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (913 Kb) [Save to disk]
  • Biological Unit Coordinates (5zji.pdb1.gz) 804 Kb
  • LPC: Ligand-Protein Contacts for 5ZJI
  • CSU: Contacts of Structural Units for 5ZJI
  • Retrieve 5ZJI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZJI from S2C, [Save to disk]
  • View 5ZJI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZJI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zji_L] [5zji_4] [5zji_J] [5zji_A] [5zji_K] [5zji_D] [5zji_G] [5zji_H] [5zji_3] [5zji_B] [5zji_I] [5zji_E] [5zji_C] [5zji_X] [5zji_1] [5zji_2] [5zji_N] [5zji_F] [5zji_Z] [5zji_O] [5zji_Y]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZJI
  • Community annotation for 5ZJI at PDBWiki (http://pdbwiki.org)

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