6AV8 Toxin date Sep 01, 2017
title Exploring Cystine Dense Peptide Space To Open A Unique Molec Toolbox
authors M.M.Gewe, P.Rupert, R.K.Strong
compound source
Molecule: U5-Theraphotoxin-Hs1b 1
Chain: A
Fragment: Residues 50-82
Synonym: U5-Trtx-Hs1b,Lectin Shl-Ib1
Engineered: Yes
 Organism_scientific: Haplopelma Schmidti
Organism_common: Chinese Bird Spider
Organism_taxid: 29017
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell: Hek-293f
symmetry Space Group: P 65
R_factor 0.216 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.639 50.639 20.104 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.89 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceScreening, large-scale production and structure-based classification of cystine-dense peptides., Correnti CE, Gewe MM, Mehlin C, Bandaranayake AD, Johnsen WA, Rupert PB, Brusniak MY, Clarke M, Burke SE, De Van Der Schueren W, Pilat K, Turnbaugh SM, May D, Watson A, Chan MK, Bahl CD, Olson JM, Strong RK, Nat Struct Mol Biol. 2018 Mar;25(3):270-278. doi: 10.1038/s41594-018-0033-9. Epub, 2018 Feb 26. PMID:29483648
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (15 Kb) [Save to disk]
  • Biological Unit Coordinates (6av8.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 6AV8
  • Structure Factors (97 Kb)
  • Retrieve 6AV8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6AV8 from S2C, [Save to disk]
    • View 6AV8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6AV8
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6av8_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6AV8
  • Community annotation for 6AV8 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science