6AVA Toxin date Sep 01, 2017
title Exploring Cystine Dense Peptide Space To Open A Unique Molec Toolbox
authors M.M.Gewe, P.Rupert, R.K.Strong
compound source
Molecule: Insectotoxin-I1
Chain: A, B
Engineered: Yes
 Organism_scientific: Mesobuthus Eupeus
Organism_common: Lesser Asian Scorpion
Organism_taxid: 34648
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek-293f
symmetry Space Group: P 43 21 2
R_factor 0.172 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.437 41.437 88.093 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • toxin activity


    • Primary referenceScreening, large-scale production and structure-based classification of cystine-dense peptides., Correnti CE, Gewe MM, Mehlin C, Bandaranayake AD, Johnsen WA, Rupert PB, Brusniak MY, Clarke M, Burke SE, De Van Der Schueren W, Pilat K, Turnbaugh SM, May D, Watson A, Chan MK, Bahl CD, Olson JM, Strong RK, Nat Struct Mol Biol. 2018 Mar;25(3):270-278. doi: 10.1038/s41594-018-0033-9. Epub, 2018 Feb 26. PMID:29483648
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (6ava.pdb1.gz) 12 Kb
  • Biological Unit Coordinates (6ava.pdb2.gz) 13 Kb
  • CSU: Contacts of Structural Units for 6AVA
  • Structure Factors (159 Kb)
  • Retrieve 6AVA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6AVA from S2C, [Save to disk]
    • View 6AVA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6AVA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ava_B] [6ava_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6AVA
  • Community annotation for 6AVA at PDBWiki (http://pdbwiki.org)

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