6B5V Membrane Protein date Sep 29, 2017
title Structure Of Trpv5 In Complex With Econazole
authors T.E.T.Hughes, D.T.Lodowski, K.W.Huynh, A.Yazici, J.Del Rosario, A S.Basak, A.Samanta, S.Chakrapani, Z.H.Zhou, M.Filizola, T.Rohacs V.Y.Moiseenkova-Bell
compound source
Molecule: Transient Receptor Potential Cation Channel Subfa Member 5;
Chain: A, B, D, C
Synonym: Trpv5,Epithelial Calcium Channel 1,Ecac1,Osm-9-Lik Channel 3,Otrpc3;
Engineered: Yes
 Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Gene: Trpv5, Ecac1
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
Expression_system_strain: Bj5457
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.80 Å
ligand CA, ECL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural basis of TRPV5 channel inhibition by econazole revealed by cryo-EM., Hughes TET, Lodowski DT, Huynh KW, Yazici A, Del Rosario J, Kapoor A, Basak S, Samanta A, Han X, Chakrapani S, Zhou ZH, Filizola M, Rohacs T, Han S, Moiseenkova-Bell VY, Nat Struct Mol Biol. 2018 Jan;25(1):53-60. doi: 10.1038/s41594-017-0009-1. Epub, 2018 Jan 1. PMID:29323279
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (346 Kb) [Save to disk]
  • Biological Unit Coordinates (6b5v.pdb1.gz) 339 Kb
  • LPC: Ligand-Protein Contacts for 6B5V
  • CSU: Contacts of Structural Units for 6B5V
  • Retrieve 6B5V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6B5V from S2C, [Save to disk]
    • View 6B5V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6B5V
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6b5v_C] [6b5v_D] [6b5v_A] [6b5v_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6B5V
  • Community annotation for 6B5V at PDBWiki (http://pdbwiki.org)

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