6BOB Transport Protein date Nov 18, 2017
title Cryo-Em Structure Of Rat Trpv6 In Nanodiscs
authors L.L.Mcgoldrick, A.K.Singh, K.Saotome, M.V.Yelshanskaya, E.C.Twom R.A.Grassucci, A.I.Sobolevsky
compound source
Molecule: Transient Receptor Potential Cation Channel Subfa Member 6;
Chain: A, B, C, D
Synonym: Trpv6,Calcium Transport Protein 1,Cat1,Epithelial Channel 2,Ecac2;
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Trpv6
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.90 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceOpening of the human epithelial calcium channel TRPV6., McGoldrick LL, Singh AK, Saotome K, Yelshanskaya MV, Twomey EC, Grassucci RA, Sobolevsky AI, Nature. 2017 Dec 20. pii: nature25182. doi: 10.1038/nature25182. PMID:29258289
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (346 Kb) [Save to disk]
  • Biological Unit Coordinates (6bob.pdb1.gz) 341 Kb
  • CSU: Contacts of Structural Units for 6BOB
  • Retrieve 6BOB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BOB from S2C, [Save to disk]
  • View 6BOB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BOB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bob_C] [6bob_A] [6bob_D] [6bob_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BOB
  • Community annotation for 6BOB at PDBWiki (http://pdbwiki.org)

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