6BQG Membrane Protein date Nov 27, 2017
title Crystal Structure Of 5-Ht2c In Complex With Ergotamine
authors Y.Peng, J.D.Mccorvy, K.Harpsoe, K.Lansu, S.Yuan, P.Popov, L.Qu, M.P L.F.Nikolajse, X.P.Huang, Y.Wu, L.Shen, W.E.Bjorn-Yoshimoto, K.D D.Wacker, G.W.Han, J.Cheng, V.Katritch, A.A.Jensen, M.A.Hanson, S D.E.Gloriam, B.L.Roth, R.C.Stevens, Z.Liu
compound source
Molecule: 5-Hydroxytryptamine Receptor 2c,Soluble Cytochrom
Chain: A
Synonym: 5-Htr2c,5-Hydroxytryptamine Receptor 1c,5-Ht1c,Ser Receptor 2c,Cytochrome B-562;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens, Escherichia Coli
Organism_common: Human
Organism_taxid: 9606, 562
Gene: Htr2c, Htr1c, Cybc
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 2 21 2
R_factor 0.261 R_Free 0.291
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.840 94.580 145.160 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand ERM, OLC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary reference5-HT2C Receptor Structures Reveal the Structural Basis of GPCR Polypharmacology., Peng Y, McCorvy JD, Harpsoe K, Lansu K, Yuan S, Popov P, Qu L, Pu M, Che T, Nikolajsen LF, Huang XP, Wu Y, Shen L, Bjorn-Yoshimoto WE, Ding K, Wacker D, Han GW, Cheng J, Katritch V, Jensen AA, Hanson MA, Zhao S, Gloriam DE, Roth BL, Stevens RC, Liu ZJ, Cell. 2018 Feb 8;172(4):719-730.e14. doi: 10.1016/j.cell.2018.01.001. Epub 2018, Feb 1. PMID:29398112
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (6bqg.pdb1.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 6BQG
  • CSU: Contacts of Structural Units for 6BQG
  • Structure Factors (391 Kb)
  • Retrieve 6BQG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BQG from S2C, [Save to disk]
  • View 6BQG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BQG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bqg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BQG
  • Community annotation for 6BQG at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science