6BTM Membrane Protein date Dec 07, 2017
title Structure Of Alternative Complex III From Flavobacterium Joh (Wild Type)
authors C.Sun, S.Benlekbir, P.Venkatakrishnan, W.Yuhang, E.Tajkhorshid, J.L.Rubinstein, R.B.Gennis
compound source
Molecule: Alternative Complex III Subunit A
Chain: A
 Organism_scientific: Flavobacterium Johnsoniae Uw101
Organism_common: Cytophaga Johnsonae
Organism_taxid: 376686
Strain: Atcc 17061 Dsm 2064 Uw101

Molecule: Alternative Complex III Subunit B
Chain: B
Organism_scientific: Flavobacterium Johnsoniae Uw101
Organism_common: Cytophaga Johnsonae
Organism_taxid: 376686
Strain: Atcc 17061 Dsm 2064 Uw101

Molecule: Alternative Complex III Subunit C
Chain: C
Synonym: Polysulphide Reductase,Nrfd
Organism_scientific: Flavobacterium Johnsoniae Uw101
Organism_common: Cytophaga Johnsonae
Organism_taxid: 376686
Strain: Atcc 17061 Dsm 2064 Uw101

Molecule: Alternative Complex III Subunit D
Chain: D
Organism_scientific: Flavobacterium Johnsoniae Uw101
Organism_common: Cytophaga Johnsonae
Organism_taxid: 376686
Strain: Atcc 17061 Dsm 2064 Uw101

Molecule: Alternative Complex III Subunit E
Chain: E
Organism_scientific: Flavobacterium Johnsoniae Uw101
Organism_common: Cytophaga Johnsonae
Organism_taxid: 376686
Strain: Atcc 17061 Dsm 2064 Uw101

Molecule: Alternative Complex III Subunit F
Chain: F
Organism_scientific: Flavobacterium Johnsoniae Uw101
Organism_common: Cytophaga Johnsonae
Organism_taxid: 376686
Strain: Atcc 17061 Dsm 2064 Uw101
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.40 Å
ligand E87, F3S, HEC, SF4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


    • C


    E


    Primary referenceStructure of the alternative complex III in a supercomplex with cytochrome oxidase., Sun C, Benlekbir S, Venkatakrishnan P, Wang Y, Hong S, Hosler J, Tajkhorshid E, Rubinstein JL, Gennis RB, Nature. 2018 May;557(7703):123-126. doi: 10.1038/s41586-018-0061-y. Epub 2018 Apr, 25. PMID:29695868
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (347 Kb) [Save to disk]
  • Biological Unit Coordinates (6btm.pdb1.gz) 338 Kb
  • LPC: Ligand-Protein Contacts for 6BTM
  • CSU: Contacts of Structural Units for 6BTM
  • Retrieve 6BTM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BTM from S2C, [Save to disk]
    • View 6BTM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6BTM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6btm_C] [6btm_D] [6btm_A] [6btm_F] [6btm_B] [6btm_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6BTM
  • Community annotation for 6BTM at PDBWiki (http://pdbwiki.org)

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