6BYM Lipid Transport date Dec 20, 2017
title Crystal Structure Of The Sterol-Bound Second Start Domain Of Lam4
authors J.A.Jentsch, I.N.Kiburu, J.Wu, K.Pandey, O.Boudker, A.K.Menon
compound source
Molecule: Sterol-Binding Protein
Chain: A, B
Fragment: Lam4 (Yhr080c)-Starkin Domain
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
Gene: Lam4, Sckg_4597
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.166 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.179 47.301 55.996 111.21 101.63 100.33
method X-Ray Diffractionresolution 2.20 Å
ligand HC3 enzyme
Primary referenceStructural basis of sterol binding and transport by a yeast StARkin domain., Jentsch JA, Kiburu I, Pandey K, Timme M, Ramlall T, Levkau B, Wu J, Eliezer D, Boudker O, Menon AK, J Biol Chem. 2018 Feb 20. pii: RA118.001881. doi: 10.1074/jbc.RA118.001881. PMID:29463678
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (6bym.pdb1.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 6BYM
  • CSU: Contacts of Structural Units for 6BYM
  • Structure Factors (239 Kb)
  • Retrieve 6BYM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BYM from S2C, [Save to disk]
    • View 6BYM in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6BYM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bym_A] [6bym_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6BYM
  • Community annotation for 6BYM at PDBWiki (http://pdbwiki.org)

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