6CFW Membrane Protein date Feb 17, 2018
title Cryoem Structure Of A Respiratory Membrane-Bound Hydrogenase
authors H.L.Li, H.J.Yu
compound source
Molecule: Monovalent Cationh+ Antiporter Subunit D
Chain: H
Engineered: Yes
 Organism_scientific: Pyrococcus Furiosus Com1
Organism_taxid: 1185654
Gene: Pfc_06375
Expression_system: Pyrococcus Furiosus
Expression_system_taxid: 2261

Molecule: Monovalent Cationh+ Antiporter Subunit C
Chain: G
Engineered: Yes
Organism_scientific: Pyrococcus Furiosus Com1
Organism_taxid: 1185654
Gene: Pfc_06370
Expression_system: Pyrococcus Furiosus
Expression_system_taxid: 2261

Molecule: Mbh Subunit
Chain: D
Engineered: Yes
Organism_scientific: Pyrococcus Furiosus (Strain Atcc 43587 3638 Jcm 8422 Vc1);
Organism_taxid: 186497
Strain: Atcc 43587 Dsm 3638 Jcm 8422 Vc1
Gene: Pf1426
Expression_system: Pyrococcus Furiosus
Expression_system_taxid: 2261

Molecule: Mbh Subunit
Chain: I
Engineered: Yes
Organism_scientific: Pyrococcus Furiosus Com1
Organism_taxid: 1185654
Gene: Pfc_06380
Expression_system: Pyrococcus Furiosus
Expression_system_taxid: 2261

Molecule: Mbh13 Nadh Dehydrogenase Subunit
Chain: M
Engineered: Yes
Organism_scientific: Pyrococcus Furiosus Com1
Organism_taxid: 1185654
Gene: Pfc_06400
Expression_system: Pyrococcus Furiosus
Expression_system_taxid: 2261

Molecule: Monovalent Cationh+ Antiporter Subunit B
Chain: F
Engineered: Yes
Organism_scientific: Pyrococcus Furiosus Com1
Organism_taxid: 1185654
Gene: Pfc_06365
Expression_system: Pyrococcus Furiosus
Expression_system_taxid: 2261

Molecule: Monovalent Cationh+ Antiporter Subunit E
Chain: A
Engineered: Yes
Organism_scientific: Pyrococcus Furiosus Com1
Organism_taxid: 1185654
Gene: Pfc_06340
Expression_system: Pyrococcus Furiosus
Expression_system_taxid: 2261

Molecule: Mbh Subunit
Chain: E
Engineered: Yes
Organism_scientific: Pyrococcus Furiosus Com1
Organism_taxid: 1185654
Gene: Pfc_06360
Expression_system: Pyrococcus Furiosus
Expression_system_taxid: 2261

Molecule: Monovalent Cationh+ Antiporter Subunit G
Chain: C
Engineered: Yes
Organism_scientific: Pyrococcus Furiosus Com1
Organism_taxid: 1185654
Gene: Pfc_06350
Expression_system: Pyrococcus Furiosus
Expression_system_taxid: 2261

Molecule: Monovalent Cationh+ Antiporter Subunit F
Chain: B
Engineered: Yes
Organism_scientific: Pyrococcus Furiosus Com1
Organism_taxid: 1185654
Gene: Pfc_06345
Expression_system: Pyrococcus Furiosus
Expression_system_taxid: 2261

Molecule: Probable Membrane-Bound Hydrogenase Subunit Mbhj
Chain: J
Ec: 1.12.7.2
Engineered: Yes
Organism_scientific: Pyrococcus Furiosus (Strain Atcc 43587 3638 Jcm 8422 Vc1);
Organism_taxid: 186497
Strain: Atcc 43587 Dsm 3638 Jcm 8422 Vc1
Gene: Mbhj, Mbh10, Pf1432
Expression_system: Pyrococcus Furiosus
Expression_system_taxid: 2261

Molecule: Membrane-Bound Hydrogenase Subunit Beta
Chain: K
Ec: 1.12.7.2
Engineered: Yes
Organism_scientific: Pyrococcus Furiosus (Strain Atcc 43587 3638 Jcm 8422 Vc1);
Organism_taxid: 186497
Strain: Atcc 43587 Dsm 3638 Jcm 8422 Vc1
Gene: Mbhk, Mbh11, Pf1433
Expression_system: Pyrococcus Furiosus
Expression_system_taxid: 2261

Molecule: Membrane-Bound Hydrogenase Subunit Alpha
Chain: L
Synonym: Mbh-Alpha
Ec: 1.12.7.2
Engineered: Yes
Organism_scientific: Pyrococcus Furiosus (Strain Atcc 43587 3638 Jcm 8422 Vc1);
Organism_taxid: 186497
Strain: Atcc 43587 Dsm 3638 Jcm 8422 Vc1
Gene: Mbhl, Mbh12, Pf1434
Expression_system: Pyrococcus Furiosus
Expression_system_taxid: 2261

Molecule: Nadh-Plastoquinone Oxidoreductase Subunit
Chain: N
Engineered: Yes
Organism_scientific: Pyrococcus Furiosus Com1
Organism_taxid: 1185654
Gene: Pfc_06405
Expression_system: Pyrococcus Furiosus
Expression_system_taxid: 2261
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.70 Å
ligand NFU, SF4 enzyme Oxidoreductase E.C.1.12.7.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • cation transmembrane transpo...


    • B


    C


    E, I


    F, D


    H, G


    J


    K


    L


    M


    N


    Primary referenceStructure of an Ancient Respiratory System., Yu H, Wu CH, Schut GJ, Haja DK, Zhao G, Peters JW, Adams MWW, Li H, Cell. 2018 Apr 25. pii: S0092-8674(18)30403-3. doi: 10.1016/j.cell.2018.03.071. PMID:29754813
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (355 Kb) [Save to disk]
  • Biological Unit Coordinates (6cfw.pdb1.gz) 348 Kb
  • LPC: Ligand-Protein Contacts for 6CFW
  • CSU: Contacts of Structural Units for 6CFW
  • Retrieve 6CFW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CFW from S2C, [Save to disk]
    • View 6CFW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6CFW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cfw_B] [6cfw_I] [6cfw_N] [6cfw_G] [6cfw_D] [6cfw_K] [6cfw_H] [6cfw_M] [6cfw_E] [6cfw_A] [6cfw_L] [6cfw_C] [6cfw_F] [6cfw_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6CFW
  • Community annotation for 6CFW at PDBWiki (http://pdbwiki.org)

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