6CP3 Biosynthetic Protein date Mar 13, 2018
title Monomer Yeast Atp Synthase (F1fo) Reconstituted In Nanodisc Inhibitor Of Oligomycin Bound.
authors A.P.Srivastava, M.Luo, J.Symersky, M.F.Liao, D.M.Mueller
compound source
Molecule: Atp Synthase Subunit 9, Mitochondrial
Chain: K, L, M, N, O, P, Q, R, S, T
Synonym: Lipid-Binding Protein,Oligomycin Resistance Protei
Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit 5, Mitochondrial
Chain: Y
Synonym: Atp Synthase Chain 5,Oligomycin Sensitivity Confer Protein,Oscp;

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit Alpha, Mitochondrial
Chain: A, B, C

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit Beta, Mitochondrial
Chain: D, E, F
Ec: 7.1.2.2

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit Gamma, Mitochondrial
Chain: G
Synonym: F-Atpase Gamma Subunit

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit Delta, Mitochondrial
Chain: H
Synonym: F-Atpase Delta Subunit

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit Epsilon, Mitochondrial
Chain: I
Synonym: Atpase Subunit Epsilon

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit 4, Mitochondrial
Chain: Z

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit D, Mitochondrial
Chain: 7

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit H, Mitochondrial
Chain: 6

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit F, Mitochondrial
Chain: U

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Protein 8
Chain: 8
Synonym: A6l,Atp-Associated Protein 1,F-Atpase Subunit 8

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit A
Chain: X
Synonym: F-Atpase Protein 6

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit J, Mitochondrial
Chain: J
Synonym: Atpase Synthase I Subunit

Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.80 Å
ligand ADP, ATP, FME enzyme E.C.7.1.2.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
6


7


8


C, A, B


F, E, D


G


H


I


J


S, T, N, K, Q, M, L, O, P, R


U


X


Y


Z


Primary referenceHigh-resolution cryo-EM analysis of the yeast ATP synthase in a lipid membrane., Srivastava AP, Luo M, Zhou W, Symersky J, Bai D, Chambers MG, Faraldo-Gomez JD, Liao M, Mueller DM, Science. 2018 Apr 12. pii: science.aas9699. doi: 10.1126/science.aas9699. PMID:29650704
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (713 Kb) [Save to disk]
  • Biological Unit Coordinates (6cp3.pdb1.gz) 693 Kb
  • LPC: Ligand-Protein Contacts for 6CP3
  • CSU: Contacts of Structural Units for 6CP3
  • Retrieve 6CP3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CP3 from S2C, [Save to disk]
  • View 6CP3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6CP3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cp3_O] [6cp3_A] [6cp3_J] [6cp3_X] [6cp3_C] [6cp3_U] [6cp3_D] [6cp3_Q] [6cp3_8] [6cp3_S] [6cp3_Y] [6cp3_E] [6cp3_T] [6cp3_K] [6cp3_Z] [6cp3_H] [6cp3_6] [6cp3_M] [6cp3_G] [6cp3_B] [6cp3_I] [6cp3_F] [6cp3_L] [6cp3_N] [6cp3_P] [6cp3_R] [6cp3_7]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6CP3
  • Community annotation for 6CP3 at PDBWiki (http://pdbwiki.org)

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