6CP5 Biosynthetic Protein date Mar 13, 2018
title Monomer Yeast Atp Synthase Fo Reconstituted In Nanodisc With Of Oligomycin Bound Generated From Focused Refinement.
authors A.P.Srivastava, M.Luo, J.Symersky, M.F.Liao, D.M.Mueller
compound source
Molecule: Atp Synthase Subunit 9, Mitochondrial
Chain: K, L, M, N, O, P, Q, R, S, T
Synonym: Lipid-Binding Protein,Oligomycin Resistance Protei
 Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Protein 8
Chain: 8
Synonym: A6l,Atp-Associated Protein 1,F-Atpase Subunit 8
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit A
Chain: X
Synonym: F-Atpase Protein 6
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit 4, Mitochondrial
Chain: Z
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit D, Mitochondrial
Chain: 7
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit F, Mitochondrial
Chain: U
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c

Molecule: Atp Synthase Subunit J, Mitochondrial
Chain: J
Synonym: Atpase Synthase I Subunit
Organism_scientific: Saccharomyces Cerevisiae (Strain Atcc S288c);
Organism_common: Baker'S Yeast
Organism_taxid: 559292
Strain: Atcc 204508 S288c
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.20 Å
ligand EFO, FME enzyme
Gene
Ontology
ChainFunctionProcessComponent
7


8


J


S, T, N, K, Q, M, L, O, P, R


U


X


Z


Primary referenceHigh-resolution cryo-EM analysis of the yeast ATP synthase in a lipid membrane., Srivastava AP, Luo M, Zhou W, Symersky J, Bai D, Chambers MG, Faraldo-Gomez JD, Liao M, Mueller DM, Science. 2018 Apr 12. pii: science.aas9699. doi: 10.1126/science.aas9699. PMID:29650704
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (181 Kb) [Save to disk]
  • Biological Unit Coordinates (6cp5.pdb1.gz) 173 Kb
  • LPC: Ligand-Protein Contacts for 6CP5
  • CSU: Contacts of Structural Units for 6CP5
  • Retrieve 6CP5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6CP5 from S2C, [Save to disk]
    • View 6CP5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6CP5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6cp5_J] [6cp5_U] [6cp5_R] [6cp5_7] [6cp5_Z] [6cp5_8] [6cp5_S] [6cp5_O] [6cp5_P] [6cp5_K] [6cp5_N] [6cp5_X] [6cp5_M] [6cp5_Q] [6cp5_T] [6cp5_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6CP5
  • Community annotation for 6CP5 at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science