6D32 Membrane Protein date Apr 14, 2018
title Crystal Structure Of Xenopus Smoothened In Complex With Cycl
authors P.Huang, S.Zheng, Y.Kim, A.C.Kruse, A.Salic
compound source
Molecule: Smoothened,Soluble Cytochrome B562,Smoothened
Chain: A
Synonym: Cytochrome B-562
Engineered: Yes
 Organism_scientific: Xenopus Laevis, Escherichia Coli
Organism_common: African Clawed Frog
Organism_taxid: 8355, 562
Gene: Smo, Smo, Cybc
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: C 1 2 1
R_factor 0.227 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
145.778 79.232 104.076 90.00 108.51 90.00
method X-Ray Diffractionresolution 3.75 Å
ligand CY8 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Basis of Smoothened Activation in Hedgehog Signaling., Huang P, Zheng S, Wierbowski BM, Kim Y, Nedelcu D, Aravena L, Liu J, Kruse AC, Salic A, Cell. 2018 May 15. pii: S0092-8674(18)30522-1. doi: 10.1016/j.cell.2018.04.029. PMID:29804838
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (6d32.pdb1.gz) 94 Kb
  • LPC: Ligand-Protein Contacts for 6D32
  • CSU: Contacts of Structural Units for 6D32
  • Structure Factors (262 Kb)
  • Retrieve 6D32 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6D32 from S2C, [Save to disk]
    • View 6D32 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6D32
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6d32_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6D32
  • Community annotation for 6D32 at PDBWiki (http://pdbwiki.org)

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