6EJI Transferase date Sep 21, 2017
title Structure Of A Glycosyltransferase
authors A.S.Ramirez, J.Boilevin, A.R.Mehdipour, G.Hummer, T.Darbre, J.L.R K.P.Locher
compound source
Molecule: Wlac Protein
Chain: A, B
Synonym: Glycosyltransferase
Engineered: Yes
 Organism_scientific: Campylobacter Jejuni
Organism_taxid: 197
Gene: Wlac
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.196 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.620 127.030 71.580 90.00 90.13 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand CL, GOL, K, MSE, NA, UD2 enzyme
Primary referenceStructural basis of the molecular ruler mechanism of a bacterial glycosyltransferase., Ramirez AS, Boilevin J, Mehdipour AR, Hummer G, Darbre T, Reymond JL, Locher KP, Nat Commun. 2018 Jan 31;9(1):445. doi: 10.1038/s41467-018-02880-2. PMID:29386647
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (131 Kb) [Save to disk]
  • Biological Unit Coordinates (6eji.pdb1.gz) 64 Kb
  • Biological Unit Coordinates (6eji.pdb2.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 6EJI
  • CSU: Contacts of Structural Units for 6EJI
  • Structure Factors (618 Kb)
  • Retrieve 6EJI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EJI from S2C, [Save to disk]
    • View 6EJI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6EJI
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6eji_B] [6eji_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6EJI
  • Community annotation for 6EJI at PDBWiki (http://pdbwiki.org)

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