6EU6 Membrane Protein date Oct 28, 2017
title Sensor Amt Protein
authors T.Pflueger, C.Hernandez, S.L.A.Andrade
compound source
Molecule: Ammonium Transporter
Chain: A
Engineered: Yes
Organism_scientific: Kuenenia Stuttgartiensis
Organism_taxid: 174633
Gene: Amtb, Kuste3690
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: C43
symmetry Space Group: P 63
R_factor 0.152 R_Free 0.185
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.745 99.745 89.069 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.98 Å
ligand LMT, MES, NH4, SO4, ZDM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSignaling ammonium across membranes through an ammonium sensor histidine kinase., Pfluger T, Hernandez CF, Lewe P, Frank F, Mertens H, Svergun D, Baumstark MW, Lunin VY, Jetten MSM, Andrade SLA, Nat Commun. 2018 Jan 11;9(1):164. doi: 10.1038/s41467-017-02637-3. PMID:29323112
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (6eu6.pdb1.gz) 194 Kb
  • LPC: Ligand-Protein Contacts for 6EU6
  • CSU: Contacts of Structural Units for 6EU6
  • Structure Factors (960 Kb)
  • Retrieve 6EU6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6EU6 from S2C, [Save to disk]
  • View 6EU6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6EU6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6eu6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6EU6
  • Community annotation for 6EU6 at PDBWiki (http://pdbwiki.org)

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