6F36 Proton Transport date Nov 28, 2017
title Polytomella Fo Model
authors O.Yildiz, W.Kuehlbrandt, N.Klusch, B.J.Murphy, D.J.Mills
compound source
Molecule: Mitochondrial Atp Synthase Subunit C
Chain: A, B, C, D, E, F, G, H, I, J
 Organism_scientific: Polytomella Sp. Pringsheim 198.80
Organism_taxid: 37502

Molecule: Mitochondrial Atp Synthase Subunit 6
Chain: M
Organism_scientific: Polytomella Sp. Pringsheim 198.80
Organism_taxid: 37502

Molecule: Mitochondrial Atp Synthase Subunit Asa6
Chain: N
Organism_scientific: Polytomella Sp. Pringsheim 198.80
Organism_taxid: 37502
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.70 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, E, B, H, C, D, I, G


M


Primary referenceStructural basis of proton translocation and force generation in mitochondrial ATP synthase., Klusch N, Murphy BJ, Mills DJ, Yildiz O, Kuhlbrandt W, Elife. 2017 Dec 6;6. doi: 10.7554/eLife.33274. PMID:29210357
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk]
  • Biological Unit Coordinates (6f36.pdb1.gz) 136 Kb
  • CSU: Contacts of Structural Units for 6F36
  • Retrieve 6F36 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6F36 from S2C, [Save to disk]
    • View 6F36 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6F36
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6f36_J] [6f36_A] [6f36_E] [6f36_G] [6f36_F] [6f36_B] [6f36_M] [6f36_I] [6f36_D] [6f36_N] [6f36_H] [6f36_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6F36
  • Community annotation for 6F36 at PDBWiki (http://pdbwiki.org)

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