6FWF Oxidoreductase date Mar 06, 2018
title Low Resolution Structure Of Neisseria Meningitidis Qnor
authors D.Young, S.Antonyuk, T.Tosha, T.Hisano, S.Hasnain, Y.Shiro
compound source
Molecule: Nitric-Oxide Reductase
Chain: A
Ec: 1.7.99.7
Engineered: Yes
Organism_scientific: Neisseria Meningitidis (Strain Alpha14
Organism_taxid: 662598
Strain: Alpha14
Gene: Norb, Nmo_1451
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: C43(De3)
Expression_system_plasmid: Prset-C
symmetry Space Group: P 21 21 21
R_factor 0.333 R_Free 0.373
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.682 123.096 130.845 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.20 Å
ligand CA, FE, HEM enzyme Oxidoreductase E.C.1.7.99.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • cytochrome-c oxidase activit...


  • Primary referenceCharacterization of the quinol-dependent nitric oxide reductase from the pathogen Neisseria meningitidis, an electrogenic enzyme., Gonska N, Young D, Yuki R, Okamoto T, Hisano T, Antonyuk S, Hasnain SS, Muramoto K, Shiro Y, Tosha T, Adelroth P, Sci Rep. 2018 Feb 26;8(1):3637. doi: 10.1038/s41598-018-21804-0. PMID:29483528
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (6fwf.pdb1.gz) 119 Kb
  • LPC: Ligand-Protein Contacts for 6FWF
  • CSU: Contacts of Structural Units for 6FWF
  • Structure Factors (483 Kb)
  • Retrieve 6FWF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6FWF from S2C, [Save to disk]
  • View 6FWF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6FWF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6fwf_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6FWF
  • Community annotation for 6FWF at PDBWiki (http://pdbwiki.org)

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