7TIM Intramolecular Oxidoreductase date Apr 23, 1991
title Structure Of The Triosephosphate Isomerase-Phosphoglycolohyd Complex: An Analogue Of The Intermediate On The Reaction Pa
authors R.C.Davenport, P.A.Bash, B.A.Seaton, M.Karplus, G.A.Petsko, D.Rin
compound source
Molecule: Triosephosphate Isomerase
Chain: A, B
Ec: 5.3.1.1
Engineered: Yes
 Organism_scientific: Saccharomyces Cerevisiae
Organism_common: Baker'S Yeast
Organism_taxid: 4932
symmetry Space Group: P 1 21 1
R_factor 0.183 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.000 83.500 38.400 90.00 99.55 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand PGH enzyme Isomerase E.C.5.3.1.1 BRENDA
related structures by homologous chain: 1I45, 1YPI
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the triosephosphate isomerase-phosphoglycolohydroxamate complex: an analogue of the intermediate on the reaction pathway., Davenport RC, Bash PA, Seaton BA, Karplus M, Petsko GA, Ringe D, Biochemistry 1991 Jun 18;30(24):5821-6. PMID:2043623
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (7tim.pdb1.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 7TIM
  • CSU: Contacts of Structural Units for 7TIM
  • Likely Quarternary Molecular Structure file(s) for 7TIM
  • Retrieve 7TIM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 7TIM from S2C, [Save to disk]
    • View 7TIM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 7TIM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 7TIM, from MSDmotif at EBI
  • Genome occurence of 7TIM's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d7tima_, region A [Jmol] [rasmolscript] [script source]
        - Domain d7timb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [7tim_A] [7tim] [7tim_B]
  • SWISS-PROT database: [P00942]
  • Domain organization of [TPIS_YEAST] by SWISSPFAM
    • Other resources with information on 7TIM
  • Community annotation for 7TIM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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